STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bpet02514,5-dihydroxyphthalate decarboxylase. (320 aa)    
Predicted Functional Partners:
Bpet0249
Putative oxidoreductase.
 
  
 0.977
pcaG
Protocatechuate 3,4-dioxygenase, alpha subunit.
    
  0.923
pcaH
Protocatechuate 3,4-dioxygenase beta chain.
    
  0.923
Bpet0252
Putative dioxygenase.
 
   
 0.898
Bpet0250
Phthalate dioxygenase reductase.
 
   
 0.790
Bpet0248
Transcriptional regulator, MarR family.
 
    0.614
Bpet3741
Putative ferredoxin reductase.
 
  
 0.601
Bpet3922
Aldolase domain protein, Class II.
 
     0.552
Bpet1232
Conserved hypothetical protein.
  
    0.478
bug5
Putative secreted protein.
       0.454
Your Current Organism:
Bordetella petrii
NCBI taxonomy Id: 94624
Other names: B. petrii, Bordetella petrii von Wintzingerode et al. 2001, CCUG 43448, DSM 12804, strain Se-1111R
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.