STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bpet0391Zinc-binding dehydrogenase family protein. (334 aa)    
Predicted Functional Partners:
bug10
Putative secreted protein.
  
    0.819
Bpet0392
Predicted acyl-CoA transferase/carnitine dehydratase; Belongs to the CoA-transferase III family.
  
  
 0.776
Bpet0378
Acyl dehydratase, MaoC family.
 
 0.746
Bpet0044
Putative aminoglycoside phosphotransferase.
 
 
 0.594
Bpet0393
Transcriptional regulator, LysR-family; Belongs to the LysR transcriptional regulatory family.
       0.583
wcbR
Putative polyketide synthase.
  
 
0.540
bug40
Putative secreted protein.
   
    0.523
adh
Alcohol dehydrogenase, zinc-containing.
 
  
 0.495
Bpet1959
Conserved hypothetical protein; Acyl dehydratase.
 
 0.446
Your Current Organism:
Bordetella petrii
NCBI taxonomy Id: 94624
Other names: B. petrii, Bordetella petrii von Wintzingerode et al. 2001, CCUG 43448, DSM 12804, strain Se-1111R
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.