STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bpet0414Altronate hydrolase. (391 aa)    
Predicted Functional Partners:
Bpet0415
Hypothetical protein predicted by Glimmer/Critica.
 
  
  0.991
Bpet0408
Probable malate/L-lactate dehydrogenase; Belongs to the LDH2/MDH2 oxidoreductase family.
 
  
 0.949
mdh1
Malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 2 family.
     
  0.900
Bpet0416
Transcriptional regulator, GntR-family.
 
   
 0.589
kduD1
2-deoxy-D-gluconate 3-dehydrogenase.
     
 0.520
kduD2
2-deoxy-D-gluconate 3-dehydrogenase.
     
 0.520
Bpet0241
Amb_all domain-containing protein; Unnamed protein product.
     
 0.482
Bpet0413
Putative periplasmic subtsrate-binding protein.
       0.470
serA2
D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
 
 
 0.454
Bpet3940
Unnamed protein product.
  
 0.453
Your Current Organism:
Bordetella petrii
NCBI taxonomy Id: 94624
Other names: B. petrii, Bordetella petrii von Wintzingerode et al. 2001, CCUG 43448, DSM 12804, strain Se-1111R
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.