STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bpet0803Probable short-chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (304 aa)    
Predicted Functional Partners:
Bpet0802
Putative acyl dehydratase.
 0.995
Bpet1224
Putative acyl dehydratase.
 0.979
Bpet0801
Unnamed protein product; Belongs to the CoA-transferase III family.
   
   0.745
Bpet3291
Hypothetical protein, putative acyl-CoA dehydrogenase.
 
  0.693
Bpet1638
Conserved hypothetical protein; Predicted nucleic-acid-binding protein containing a Zn-ribbon.
 
     0.646
Bpet1637
Putative thiolase.
 
 
 0.633
Bpet0379
Conserved hypothetical protein; Predicted nucleic-acid-binding protein containing a Zn-ribbon.
  
     0.608
Bpet0380
Putative thiolase.
 
 
 0.602
Bpet3898
Probable acyl-CoA dehydrogenase.
 
  0.602
Bpet3290
Putative acyl-CoA dehydrogenase.
 
  0.599
Your Current Organism:
Bordetella petrii
NCBI taxonomy Id: 94624
Other names: B. petrii, Bordetella petrii von Wintzingerode et al. 2001, CCUG 43448, DSM 12804, strain Se-1111R
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.