STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bpet1163Conserved hypothetical protein. (96 aa)    
Predicted Functional Partners:
Bpet1169
Putative amino acid ABC transport system, substrate-binding protein.
 
     0.818
Bpet0035
Putative membrane protein.
 
     0.765
rbsB
Ribose ABC transporter, substrate binding protein.
 
  
 0.757
Bpet1164
Probable short-chain dehydrogenase.
  
    0.748
Bpet1167
Branched-chain amino acid ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
     0.723
Bpet3907
Conserved hypothetical protein; Regulator of polyketide synthase expression.
 
     0.716
Bpet0530
Putative lipoprotein.
 
    0.701
Bpet1168
Putative branched-chain amino acid transport permease; Belongs to the binding-protein-dependent transport system permease family.
 
     0.698
Bpet1166
High-affinity branched-chain amino acid transport, ATP-binding protein.
 
     0.664
Bpet1162
NADH-dependent flavin oxidoreductase.
  
    0.663
Your Current Organism:
Bordetella petrii
NCBI taxonomy Id: 94624
Other names: B. petrii, Bordetella petrii von Wintzingerode et al. 2001, CCUG 43448, DSM 12804, strain Se-1111R
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