STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bpet1524Glycosyltransferase. (342 aa)    
Predicted Functional Partners:
Bpet4005
Conserved hypothetical protein; FOG: TPR repeat.
  
 
 0.890
Bpet1525
Glycosyltransferase.
 
   
 0.847
Bpet1368
Probable signalling protein.
  
  
 0.837
Bpet1526
Acetyltransferase.
     
 0.826
Bpet1527
Conserved hypothetical protein; Oligosaccharide exporter probably involved in biosynthesis of a cell envelope polysaccharide.
  
  
 0.825
Bpet3116
Polysaccharide deacetylase.
  
  
 0.783
Bpet1523
Transposition-related fusion-protein; Belongs to the DegT/DnrJ/EryC1 family.
 
   
 0.736
argG
Argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 2 subfamily.
 
  
 0.673
Bpet1528
Putative transposase.
       0.594
Bpet2479
Putative metalloprotease; Extracellular zinc metalloprotease.
  
   
 0.550
Your Current Organism:
Bordetella petrii
NCBI taxonomy Id: 94624
Other names: B. petrii, Bordetella petrii von Wintzingerode et al. 2001, CCUG 43448, DSM 12804, strain Se-1111R
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