bug39 protein (Bordetella petrii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

bug39

Putative secreted protein. (321 aa)

Predicted Functional Partners:

Bpet0305

0.816

Bpet0670

0.816

Bpet4353

0.770

Bpet0754

0.764

Bpet1664

0.719

leuC1

0.700

Bpet1667

0.700

Bpet4980

0.696

Bpet1666

0.690

Bpet0671

0.587

Your Current Organism:

Bordetella petrii

NCBI taxonomy Id: 94624
Other names: B. petrii, Bordetella petrii von Wintzingerode et al. 2001, CCUG 43448, DSM 12804, strain Se-1111R

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Bpet0305	Bpet0671	Bpet0305	Bpet0671	Putative membrane protein.	Hypothetical 16.3 kDa protein in TAR-I ttuC' 3'region.	0.439
Bpet0305	bug39	Bpet0305	Bpet1663	Putative membrane protein.	Putative secreted protein.	0.816
Bpet0670	Bpet0671	Bpet0670	Bpet0671	Putative membrane protein.	Hypothetical 16.3 kDa protein in TAR-I ttuC' 3'region.	0.855
Bpet0670	bug39	Bpet0670	Bpet1663	Putative membrane protein.	Putative secreted protein.	0.816
Bpet0671	Bpet0305	Bpet0671	Bpet0305	Hypothetical 16.3 kDa protein in TAR-I ttuC' 3'region.	Putative membrane protein.	0.439
Bpet0671	Bpet0670	Bpet0671	Bpet0670	Hypothetical 16.3 kDa protein in TAR-I ttuC' 3'region.	Putative membrane protein.	0.855
Bpet0671	Bpet0754	Bpet0671	Bpet0754	Hypothetical 16.3 kDa protein in TAR-I ttuC' 3'region.	Uncharacterized protein conserved in bacteria.	0.438
Bpet0671	Bpet4353	Bpet0671	Bpet4353	Hypothetical 16.3 kDa protein in TAR-I ttuC' 3'region.	Uncharacterized protein conserved in bacteria.	0.439
Bpet0671	Bpet4980	Bpet0671	Bpet4980	Hypothetical 16.3 kDa protein in TAR-I ttuC' 3'region.	Putative membrane protein.	0.439
Bpet0671	bug39	Bpet0671	Bpet1663	Hypothetical 16.3 kDa protein in TAR-I ttuC' 3'region.	Putative secreted protein.	0.587
Bpet0754	Bpet0671	Bpet0754	Bpet0671	Uncharacterized protein conserved in bacteria.	Hypothetical 16.3 kDa protein in TAR-I ttuC' 3'region.	0.438
Bpet0754	bug39	Bpet0754	Bpet1663	Uncharacterized protein conserved in bacteria.	Putative secreted protein.	0.764
Bpet1664	Bpet1666	Bpet1664	Bpet1666	Transcriptional regulator, GntR family.	Aconitase_C domain-containing protein; Unnamed protein product; Belongs to the LeuD family.	0.759
Bpet1664	Bpet1667	Bpet1664	Bpet1667	Transcriptional regulator, GntR family.	Putative Phosphorylmutase.	0.762
Bpet1664	bug39	Bpet1664	Bpet1663	Transcriptional regulator, GntR family.	Putative secreted protein.	0.719
Bpet1664	leuC1	Bpet1664	Bpet1665	Transcriptional regulator, GntR family.	3-isopropylmalate dehydratase; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. Belongs to the aconitase/IPM isomerase family.	0.762
Bpet1666	Bpet1664	Bpet1666	Bpet1664	Aconitase_C domain-containing protein; Unnamed protein product; Belongs to the LeuD family.	Transcriptional regulator, GntR family.	0.759
Bpet1666	Bpet1667	Bpet1666	Bpet1667	Aconitase_C domain-containing protein; Unnamed protein product; Belongs to the LeuD family.	Putative Phosphorylmutase.	0.797
Bpet1666	bug39	Bpet1666	Bpet1663	Aconitase_C domain-containing protein; Unnamed protein product; Belongs to the LeuD family.	Putative secreted protein.	0.690
Bpet1666	leuC1	Bpet1666	Bpet1665	Aconitase_C domain-containing protein; Unnamed protein product; Belongs to the LeuD family.	3-isopropylmalate dehydratase; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. Belongs to the aconitase/IPM isomerase family.	0.998