STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
phbCPoly-beta-hydroxybutyrate polymerase. (540 aa)    
Predicted Functional Partners:
phbB
acetoacetyl-CoA reductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
 
 0.982
phaZ
Intracellular PHB depolymerase.
 
  
 0.969
Bpet3206
Hypothetical protein.
 
  
 0.931
fadB2
enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxybutyryl-CoA epimerase.
     
 0.912
Bpet3205
Hypothetical protein.
    
 0.907
phbF
Uncharacterized protein conserved in bacteria.
 
   
 0.890
Bpet3620
Conserved hypothetical protein.
   
 0.716
Bpet2760
Probable hydrolase.
 
  
 0.629
Bpet0930
Conserved hypothetical protein.
 
  
 0.612
Bpet3265
Conserved hypothetical protein; Predicted esterase of the alpha-beta hydrolase superfamily.
 
   
 0.554
Your Current Organism:
Bordetella petrii
NCBI taxonomy Id: 94624
Other names: B. petrii, Bordetella petrii von Wintzingerode et al. 2001, CCUG 43448, DSM 12804, strain Se-1111R
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.