STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
phbFUncharacterized protein conserved in bacteria. (188 aa)    
Predicted Functional Partners:
phbC
Poly-beta-hydroxybutyrate polymerase.
 
   
 0.890
phbB
acetoacetyl-CoA reductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
   
 0.849
Bpet0930
Conserved hypothetical protein.
 
   
 0.729
Bpet1852
Putative exported protein.
 
     0.592
Bpet1853
Putative secreted protein.
 
     0.588
phaZ
Intracellular PHB depolymerase.
 
   
 0.563
fixL
Two-component sensor kinase.
  
    0.549
Bpet1918
Conserved hypothetical protein; NTP pyrophosphohydrolases including oxidative damage repair enzymes.
  
     0.521
Bpet1854
Putative membrane protein.
       0.480
Bpet1855
Putative regulatory protein.
 
     0.478
Your Current Organism:
Bordetella petrii
NCBI taxonomy Id: 94624
Other names: B. petrii, Bordetella petrii von Wintzingerode et al. 2001, CCUG 43448, DSM 12804, strain Se-1111R
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.