STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bpet1932Hypothetical protein predicted by Glimmer/Critica. (63 aa)    
Predicted Functional Partners:
paaZ1
Putative oxidoreductase.
 
     0.975
paaG
enoyl-CoA hydratase probably involved in phenylacetate degradation.
 
 
 0.838
paaI
Phenylacetic acid degradation protein.
 
   
 0.825
paaK
Phenylacetate-coenzyme A ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA).
 
 
 0.750
wcbR
Putative polyketide synthase.
  
 
 0.565
Bpet1930
Probable transposase.
       0.553
tnp12
Transposase.
       0.553
Bpet0293
Urea amidolyase subunit 2.
  
  
 0.496
gltB,asb
Glutamate synthase, large subunit.
  
  
 0.460
paaX
Phenylacetic acid degradation operon negative regulatory protein.
 
  
 0.442
Your Current Organism:
Bordetella petrii
NCBI taxonomy Id: 94624
Other names: B. petrii, Bordetella petrii von Wintzingerode et al. 2001, CCUG 43448, DSM 12804, strain Se-1111R
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.