STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
paaKPhenylacetate-coenzyme A ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA). (437 aa)    
Predicted Functional Partners:
paaI
Phenylacetic acid degradation protein.
 
 
 0.993
paaA
Putative phenylacetic acid degradation protein.
 
 
 0.971
paaB
Phenylacetic acid degradation protein.
 
 
 0.968
paaC
Phenylacetic acid degradation protein.
 
 
 0.967
paaD
Phenylacetic acid degradation protein.
 
  
 0.966
paaE
Predicted phenylacetic acid degradation NADH oxidoreductase.
 
 
 0.955
Bpet1118
Putative phenylacetate-CoA ligase.
  
  
0.929
Bpet4737
Putative phenylacetate-CoA ligase.
  
  
0.927
Bpet0288
Amidase family protein.
    
  0.903
Bpet3846
Probable amidase.
    
  0.903
Your Current Organism:
Bordetella petrii
NCBI taxonomy Id: 94624
Other names: B. petrii, Bordetella petrii von Wintzingerode et al. 2001, CCUG 43448, DSM 12804, strain Se-1111R
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.