Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Bpet2012Sensor histidine kinase. (411 aa)    
Predicted Functional Partners:
Bpet2013
Transcriptional regulatory protein.
 
 
 0.931
Bpet2055
Two-component response regulatory protein.
 
 
 0.857
basR
Two-component response regulatory protein.
 
 
 0.857
Bpet4019
Two-component system response regulator.
 
 
 0.852
Bpet0665
Two component response regulator.
 
 
 0.848
Bpet4984
Response regulator protein.
 
 
 0.848
Bpet2466
Two-component response regulator.
 
 
 0.842
Bpet4959
Probable two-component response regulator.
 
 
 0.841
phoB
Response regulator.
 
 
 0.839
Bpet4609
Two-component response regulator.
 
 
 0.838
Your Current Organism:
Bordetella petrii
NCBI taxonomy Id: 94624
Other names: B. petrii, Bordetella petrii von Wintzingerode et al. 2001, CCUG 43448, DSM 12804, strain Se-1111R
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