STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bpet2088Transcriptional regulator, AraC-family. (296 aa)    
Predicted Functional Partners:
Bpet4882
Transcriptional regulator, AraC family.
 
 
 0.716
Bpet3183
Transcriptional regulator, AraC family.
 
 
 0.672
Bpet3519
Transcriptional regulator, AraC family.
 
 
 0.620
Bpet4641
Transcriptional regulator, AraC family.
 
 
 0.588
Bpet3728
Transcriptional regulator, MarR family.
  
  
 0.547
Bpet1511
Putative transcriptional regulator.
 
 
 0.490
Bpet2086
Putative membrane protein.
       0.479
Bpet2087
Conserved hypothetical protein.
       0.479
Bpet2226
Transcriptional regulator, AraC family.
 
 
 0.477
Bpet3830
Transcriptional regulator, AraC family.
 
 
 0.476
Your Current Organism:
Bordetella petrii
NCBI taxonomy Id: 94624
Other names: B. petrii, Bordetella petrii von Wintzingerode et al. 2001, CCUG 43448, DSM 12804, strain Se-1111R
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.