Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Bpet1368 | Bpet2109 | Bpet1368 | Bpet2109 | Probable signalling protein. | Methyl-accepting transducer domain-containing protein; Unnamed protein product. | 0.915 |
Bpet1368 | cheA | Bpet1368 | Bpet2102 | Probable signalling protein. | Chemotaxis protein CheA. | 0.830 |
Bpet1368 | cheB | Bpet1368 | Bpet2106 | Probable signalling protein. | Chemotaxis response regulator; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. | 0.845 |
Bpet1368 | cheD | Bpet1368 | Bpet0499 | Probable signalling protein. | Chemotaxis protein; Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis; Belongs to the CheD family. | 0.541 |
Bpet1368 | cheR | Bpet1368 | Bpet2105 | Probable signalling protein. | Chemotaxis protein methyltransferase; Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP. | 0.813 |
Bpet1368 | cheW | Bpet1368 | Bpet2103 | Probable signalling protein. | Chemotaxis protein CheW. | 0.807 |
Bpet1368 | cheY1 | Bpet1368 | Bpet2101 | Probable signalling protein. | Chemotaxis protein CheY. | 0.860 |
Bpet1368 | cheY2 | Bpet1368 | Bpet2107 | Probable signalling protein. | Chemotaxis protein CheY. | 0.631 |
Bpet1368 | flhB | Bpet1368 | Bpet2110 | Probable signalling protein. | Flagellar biosynthesis protein FlhB; Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the type III secretion exporter family. | 0.713 |
Bpet2109 | Bpet1368 | Bpet2109 | Bpet1368 | Methyl-accepting transducer domain-containing protein; Unnamed protein product. | Probable signalling protein. | 0.915 |
Bpet2109 | cheA | Bpet2109 | Bpet2102 | Methyl-accepting transducer domain-containing protein; Unnamed protein product. | Chemotaxis protein CheA. | 0.997 |
Bpet2109 | cheB | Bpet2109 | Bpet2106 | Methyl-accepting transducer domain-containing protein; Unnamed protein product. | Chemotaxis response regulator; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. | 0.993 |
Bpet2109 | cheD | Bpet2109 | Bpet0499 | Methyl-accepting transducer domain-containing protein; Unnamed protein product. | Chemotaxis protein; Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis; Belongs to the CheD family. | 0.972 |
Bpet2109 | cheR | Bpet2109 | Bpet2105 | Methyl-accepting transducer domain-containing protein; Unnamed protein product. | Chemotaxis protein methyltransferase; Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP. | 0.993 |
Bpet2109 | cheW | Bpet2109 | Bpet2103 | Methyl-accepting transducer domain-containing protein; Unnamed protein product. | Chemotaxis protein CheW. | 0.997 |
Bpet2109 | cheY1 | Bpet2109 | Bpet2101 | Methyl-accepting transducer domain-containing protein; Unnamed protein product. | Chemotaxis protein CheY. | 0.981 |
Bpet2109 | cheY2 | Bpet2109 | Bpet2107 | Methyl-accepting transducer domain-containing protein; Unnamed protein product. | Chemotaxis protein CheY. | 0.980 |
Bpet2109 | cheZ | Bpet2109 | Bpet2108 | Methyl-accepting transducer domain-containing protein; Unnamed protein product. | Chemotaxis protein CheZ; Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P). | 0.846 |
Bpet2109 | flhB | Bpet2109 | Bpet2110 | Methyl-accepting transducer domain-containing protein; Unnamed protein product. | Flagellar biosynthesis protein FlhB; Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the type III secretion exporter family. | 0.746 |
cheA | Bpet1368 | Bpet2102 | Bpet1368 | Chemotaxis protein CheA. | Probable signalling protein. | 0.830 |
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