STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bpet2978Transcriptional regulator, MarR family. (151 aa)    
Predicted Functional Partners:
Bpet2977
Hypothetical protein predicted by Glimmer/Critica.
       0.554
Bpet2980
Putative SugE protein.
     
 0.540
gst6
Putative glutathione S-transferase; Belongs to the GST superfamily.
       0.523
Bpet1324
Putative DNA-binding protein.
  
 
 
 0.499
Bpet0496
Predicted transcriptional regulator.
  
 
 
 0.440
Bpet2994
Transcriptional regulator, MarR family.
  
     0.436
Bpet3387
Transcriptional regulator, MarR family.
  
     0.434
Bpet3372
Putative membrane protein.
  
     0.416
Bpet4384
HTH-type transcriptional regulator prtR.
  
 
 
 0.405
Your Current Organism:
Bordetella petrii
NCBI taxonomy Id: 94624
Other names: B. petrii, Bordetella petrii von Wintzingerode et al. 2001, CCUG 43448, DSM 12804, strain Se-1111R
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.