STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bpet3185Predicted polymerase most proteins contain PALM domain HD hydrolase domain and Zn-ribbon domain. (320 aa)    
Predicted Functional Partners:
Bpet3253
Unnamed protein product.
  
 
 0.813
Bpet1853
Putative secreted protein.
   
   0.720
azu
Azurin precursor; Transfers electrons from cytochrome c551 to cytochrome oxidase.
    
 
 0.720
Bpet2840
Hypothetical protein slightly similar to glycosyltransferases.
 
     0.666
tolB
TolB protein precursor; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
   
 
 0.627
Bpet3140
Uncharacterized conserved protein contains double-stranded beta-helix domain.
 
   
 0.546
nirS
Nitrite reductase precursor / cytochrome cd1, cytochrome oxidase, hydroxylamine reductase.
 
 
 0.503
Bpet1608
Putative lipoprotein.
  
   
 0.494
nosR
Regulatory protein NosR.
  
  
 0.480
Bpet3212
Hypothetical protein predicted by Glimmer/Critica.
  
 
 0.470
Your Current Organism:
Bordetella petrii
NCBI taxonomy Id: 94624
Other names: B. petrii, Bordetella petrii von Wintzingerode et al. 2001, CCUG 43448, DSM 12804, strain Se-1111R
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.