STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bpet3316Putative permease component of branched-chain amino acid transport system; Belongs to the binding-protein-dependent transport system permease family. (626 aa)    
Predicted Functional Partners:
Bpet3317
Putative ATP-binding component of branched-chain amino acid ABC transporter.
  
 0.982
Bpet3315
Branched-chain amino acid-binding protein.
 
  
 0.981
Bpet1655
Putative branched-chain amino acid transport system protein; Belongs to the binding-protein-dependent transport system permease family.
 
  
0.850
Bpet1716
Putative branched-chain amino acid transport system protein; Belongs to the binding-protein-dependent transport system permease family.
 
  
0.846
Bpet1184
Putative Substrate-binding periplasmic protein.
 
  
 0.820
Bpet0547
Putative branched-chain amino acid ABC transporter, ATP-binding protein.
  
 0.794
Bpet3579
Putative branched-chain amino acid ABC transporter, ATP-binding protein.
  
 0.790
Bpet0544
Putative ABC transporter substrate binding protein.
 
  
 0.779
Bpet3912
Putative branched-chain amino acid ABC transporter, ATP-binding protein.
  
 0.771
Bpet1724
Putative branched chain ABC transporter, ATP-binding protein.
  
 0.767
Your Current Organism:
Bordetella petrii
NCBI taxonomy Id: 94624
Other names: B. petrii, Bordetella petrii von Wintzingerode et al. 2001, CCUG 43448, DSM 12804, strain Se-1111R
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