STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bpet3567Conserved hypothetical protein; Acyl dehydratase. (147 aa)    
Predicted Functional Partners:
petH
ferredoxin-NADP oxidoreductase.
 
 
 0.696
Bpet3570
Conserved hypothetical protein, possible enoyl-CoA hydratase/isomerase family member.
  
 0.635
pbcA
benzoyl-CoA oxygenase component B.
  
  
 0.627
Bpet0844
Conserved hypothetical protein.
  
     0.608
Bpet1228
Acyl dehydratase, MaoC family.
  
     0.606
wcbR
Putative polyketide synthase.
  
 0.582
Bpet1156
Conserved hypothetical protein.
  
     0.578
Bpet3779
Probable acyl-CoA dehydrogenase.
 
 0.532
Bpet0793
Acyl dehydratase, MaoC family.
  
     0.529
Bpet0345
Catalase; Unnamed protein product; Belongs to the catalase family.
   
 0.523
Your Current Organism:
Bordetella petrii
NCBI taxonomy Id: 94624
Other names: B. petrii, Bordetella petrii von Wintzingerode et al. 2001, CCUG 43448, DSM 12804, strain Se-1111R
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.