STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nirLTranscriptional regulator. (169 aa)    
Predicted Functional Partners:
nirG
Heme biosynthesis protein.
  
 0.997
nirD
Transcriptional regulator.
    
0.982
nirC
Probable c-type cytochrome precursor.
 
  
 0.981
nirF
Heme d1 biosynthesis protein.
 
  
 0.976
nirN
Nitrite reductase precursor / Cytochrome cd1.
 
  
 0.966
nirJ
Heme biosynthesis protein.
 
  
 0.941
nirS
Nitrite reductase precursor / cytochrome cd1, cytochrome oxidase, hydroxylamine reductase.
 
  
 0.905
nirH
Heme biosynthesis protein.
 
   
0.889
nirB
Cytochrome c-552 precursor.
       0.736
norB
Nitric-oxide reductase subunit B; Belongs to the heme-copper respiratory oxidase family.
 
  
 0.725
Your Current Organism:
Bordetella petrii
NCBI taxonomy Id: 94624
Other names: B. petrii, Bordetella petrii von Wintzingerode et al. 2001, CCUG 43448, DSM 12804, strain Se-1111R
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.