STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bpet4386Putative bacteriophage repressor protein. (161 aa)    
Predicted Functional Partners:
gp05
Putative bacteriophage protein GP05.
 
     0.864
muA
Transposase A.
       0.795
gp16
Bacteriophage protein.
 
     0.700
ner
Mu-like prophage FluMu DNA-binding protein Ner.
 
     0.679
gp28
Mu-like prophage FluMu protein gp28.
  
     0.668
gpF
F protein (gpF) (Protein gp30).
  
     0.634
muB
DNA transposition protein (gpB).
       0.562
gp36
Phage-related protein.
  
     0.554
gp32
Conserved phage-related protein.
  
     0.509
gp29
Phage-related protein.
  
     0.507
Your Current Organism:
Bordetella petrii
NCBI taxonomy Id: 94624
Other names: B. petrii, Bordetella petrii von Wintzingerode et al. 2001, CCUG 43448, DSM 12804, strain Se-1111R
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.