STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bpet4531Uncharacterized protein conserved in bacteria. (98 aa)    
Predicted Functional Partners:
catC
Methylmuconolactone isomerase; Belongs to the muconolactone Delta-isomerase family.
  
    0.823
Bpet4533
Conserved hypothetical protein.
 
     0.815
pcaJ4
Putative 3-oxoadipate CoA-transferase subunit B.
  
    0.770
Bpet4532
3-oxoadipate enol-lactone hydrolase.
  
    0.766
pcaI4
Putative 3-oxoadipate CoA-transferase subunit A.
  
    0.677
Bpet1544
Hypothetical protein predicted by Glimmer/Critica.
  
     0.644
Bpet2730
Putative hydrolase.
  
     0.598
Bpet4534
Putative exported protein.
       0.484
pcaR2
Transcriptional regulator, IclR family.
       0.474
Bpet2160
Uncharacterized conserved protein, contains double-stranded beta-helix domain.
  
    0.403
Your Current Organism:
Bordetella petrii
NCBI taxonomy Id: 94624
Other names: B. petrii, Bordetella petrii von Wintzingerode et al. 2001, CCUG 43448, DSM 12804, strain Se-1111R
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.