STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bpet4792Putative transport protein ATP-binding. (242 aa)    
Predicted Functional Partners:
Bpet4791
Putative ABC transporter permease protein.
 
 
 0.999
Bpet4790
Putative periplasmic solute-binding protein; Belongs to the bacterial solute-binding protein 9 family.
 
  
 0.996
Bpet4788
Putative membrane protein; Belongs to the NiCoT transporter (TC 2.A.52) family.
 
   
 0.741
Bpet4793
Putative regulatory protein; Belongs to the Fur family.
  
  
 0.732
Bpet4789
Conserved hypothetical protein; ABC-type uncharacterized transport system periplasmic component.
 
   
 0.716
fur
Ferric uptake regulation protein; Belongs to the Fur family.
  
  
 0.539
Bpet4787
TonB-dependent outer membrane receptor.
  
  
 0.529
Bpet4794
Conserved hypothetical protein; Putative GTPases (G3E family).
     
 0.440
wcbR
Putative polyketide synthase.
 
  
 0.430
hemF
Oxygen-dependent coproporphyrinogen-III oxidase; Involved in the heme biosynthesis. Catalyzes the aerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen-III to yield the vinyl groups in protoporphyrinogen- IX.
     
 0.425
Your Current Organism:
Bordetella petrii
NCBI taxonomy Id: 94624
Other names: B. petrii, Bordetella petrii von Wintzingerode et al. 2001, CCUG 43448, DSM 12804, strain Se-1111R
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