STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OAE46677.1Rossman fold protein, TIGR00730 family; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LOG family. (200 aa)    
Predicted Functional Partners:
prmC
protein-(glutamine-N5) methyltransferase, release factor-specific; Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif; Belongs to the protein N5-glutamine methyltransferase family. PrmC subfamily.
      0.564
OAE46676.1
Aspartate racemase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the aspartate/glutamate racemases family.
       0.558
OAE46679.1
Peptidase M23; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.553
OAE46678.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.522
surE
5'/3'-nucleotidase SurE; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family.
    
  0.505
OAE40876.1
Peptidase M24; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.420
Your Current Organism:
Ochrobactrum intermedium
NCBI taxonomy Id: 94625
Other names: CCUG 24694, CIP 105838, CNS 2-75, CNS:2-75, DSM 17986, IFO 15820, LMG 3301, LMG:3301, NBRC 15820, NCTC 12171, O. intermedium, Ochrobactrum sp. T, Ochrobactrum sp. T(2010)
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