STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OAE40844.1Cysteine desulfurase; Derived by automated computational analysis using gene prediction method: Protein Homology. (386 aa)    
Predicted Functional Partners:
OAE44476.1
Iron-sulfur cluster assembly scaffold protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.999
OAE46744.1
Response regulator SirA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sulfur carrier protein TusA family.
   
 0.982
OAE44439.1
2Fe-2S ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.975
OAE40967.1
Universal stress protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.960
selD
Selenide,water dikinase SelD; Synthesizes selenophosphate from selenide and ATP.
   
 0.933
OAE46253.1
Thiamine biosynthesis protein ThiF; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.926
OAE48320.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.919
OAE40833.1
Fe-S cluster assembly scaffold SufA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the HesB/IscA family.
 
  
 0.916
OAE38880.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.915
OAE37118.1
Rrf2 family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.915
Your Current Organism:
Ochrobactrum intermedium
NCBI taxonomy Id: 94625
Other names: CCUG 24694, CIP 105838, CNS 2-75, CNS:2-75, DSM 17986, IFO 15820, LMG 3301, LMG:3301, NBRC 15820, NCTC 12171, O. intermedium, Ochrobactrum sp. T, Ochrobactrum sp. T(2010)
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