STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BESB_060710Uncharacterized protein. (963 aa)    
Predicted Functional Partners:
BESB_008070
DNA polymerase epsilon subunit B protein.
    
 0.674
BESB_084060
DNA polymerase.
   
 0.620
BESB_002290
ERCC4 domain-containing protein.
    
 0.614
BESB_050380
Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.
    
 0.603
BESB_053830
Small nuclear ribonucleoprotein Sm D2.
    
 0.596
BESB_083790
Tetratricopeptide repeat-containing protein.
    
 0.594
BESB_047850
Uncharacterized protein.
    
 0.594
BESB_030090
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.582
BESB_077530
Uncharacterized protein.
   
 0.565
BESB_046890
Zinc finger (CCCH type) motif-containing protein.
    
  0.557
Your Current Organism:
Besnoitia besnoiti
NCBI taxonomy Id: 94643
Other names: B. besnoiti
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