BESB_054450 protein (Besnoitia besnoiti) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BESB_054450

WD-40 repeat protein. (698 aa)

Predicted Functional Partners:

BESB_023570

0.999

BESB_078020

0.999

BESB_081530

0.999

BESB_074800

0.999

BESB_026660

0.999

BESB_022420

0.999

BESB_013340

0.999

BESB_082420

0.999

BESB_051900

0.999

BESB_084390

0.999

Your Current Organism:

Besnoitia besnoiti

NCBI taxonomy Id: 94643
Other names: B. besnoiti

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BESB_013340	BESB_022420	A0A2A9MBF6	A0A2A9M8N2	U3 small nucleolar RNA-associated protein 6 protein.	Uncharacterized protein.	0.999
BESB_013340	BESB_023570	A0A2A9MBF6	A0A2A9M1K2	U3 small nucleolar RNA-associated protein 6 protein.	Putative 40S ribosomal protein S4.	0.999
BESB_013340	BESB_026660	A0A2A9MBF6	A0A2A9M8H5	U3 small nucleolar RNA-associated protein 6 protein.	Putative periodic tryptophan protein PWP2.	0.999
BESB_013340	BESB_051900	A0A2A9MBF6	A0A2A9MCE2	U3 small nucleolar RNA-associated protein 6 protein.	BING4CT domain-containing protein.	0.999
BESB_013340	BESB_054450	A0A2A9MBF6	A0A2A9MF12	U3 small nucleolar RNA-associated protein 6 protein.	WD-40 repeat protein.	0.999
BESB_013340	BESB_074800	A0A2A9MBF6	A0A2A9M782	U3 small nucleolar RNA-associated protein 6 protein.	AARP2CN (NUC121) domain-containing protein.	0.999
BESB_013340	BESB_078020	A0A2A9MBF6	A0A2A9M6H5	U3 small nucleolar RNA-associated protein 6 protein.	Sas10 C-terminal domain-containing protein.	0.999
BESB_013340	BESB_081530	A0A2A9MBF6	A0A2A9M6Y5	U3 small nucleolar RNA-associated protein 6 protein.	Bystin protein.	0.999
BESB_013340	BESB_082420	A0A2A9MBF6	A0A2A9MBI8	U3 small nucleolar RNA-associated protein 6 protein.	WD domain, G-beta repeat-containing protein.	0.999
BESB_013340	BESB_084390	A0A2A9MBF6	A0A2A9MCW8	U3 small nucleolar RNA-associated protein 6 protein.	RRP7 domain-containing protein.	0.997
BESB_022420	BESB_013340	A0A2A9M8N2	A0A2A9MBF6	Uncharacterized protein.	U3 small nucleolar RNA-associated protein 6 protein.	0.999
BESB_022420	BESB_023570	A0A2A9M8N2	A0A2A9M1K2	Uncharacterized protein.	Putative 40S ribosomal protein S4.	0.999
BESB_022420	BESB_026660	A0A2A9M8N2	A0A2A9M8H5	Uncharacterized protein.	Putative periodic tryptophan protein PWP2.	0.999
BESB_022420	BESB_051900	A0A2A9M8N2	A0A2A9MCE2	Uncharacterized protein.	BING4CT domain-containing protein.	0.999
BESB_022420	BESB_054450	A0A2A9M8N2	A0A2A9MF12	Uncharacterized protein.	WD-40 repeat protein.	0.999
BESB_022420	BESB_074800	A0A2A9M8N2	A0A2A9M782	Uncharacterized protein.	AARP2CN (NUC121) domain-containing protein.	0.999
BESB_022420	BESB_078020	A0A2A9M8N2	A0A2A9M6H5	Uncharacterized protein.	Sas10 C-terminal domain-containing protein.	0.982
BESB_022420	BESB_081530	A0A2A9M8N2	A0A2A9M6Y5	Uncharacterized protein.	Bystin protein.	0.999
BESB_022420	BESB_082420	A0A2A9M8N2	A0A2A9MBI8	Uncharacterized protein.	WD domain, G-beta repeat-containing protein.	0.997
BESB_022420	BESB_084390	A0A2A9M8N2	A0A2A9MCW8	Uncharacterized protein.	RRP7 domain-containing protein.	0.999