STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BESB_074120RNA_pol_A_bac domain-containing protein. (1256 aa)    
Predicted Functional Partners:
BESB_068140
Paf1/RNA polymerase II complex component LEO1.
   
 0.999
BESB_053770
DNA-directed RNA polymerase II RPB6.
  
 0.978
BESB_022750
Inhibitor of growth protein.
   
 0.967
BESB_038790
DNA-directed RNA polymerase II RPB10.
  
 0.967
BESB_045330
DNA-directed RNA polymerase II RPB5.
  
 0.958
BESB_008150
DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.
   
 0.956
BESB_006310
DNA-directed RNA polymerase I RPA43.
   
 0.956
BESB_002350
DNA-directed RNA polymerase I RPAC2.
   
 0.948
BESB_009220
Ribosomal protein RPS3.
  
 
 0.946
BESB_024960
RNA polymerase Rpb7, N-terminal domain-containing protein.
   
 0.945
Your Current Organism:
Besnoitia besnoiti
NCBI taxonomy Id: 94643
Other names: B. besnoiti
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