STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BESB_0018104-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase. (835 aa)    
Predicted Functional Partners:
BESB_076700
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase.
 
  
 0.955
BESB_059320
4-hydroxy-3-methylbut-2-enyl diphosphate reductase.
  
  
 0.898
BESB_002720
4-hydroxybenzoate polyprenyltransferase, mitochondrial; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of coenzyme Q (CoQ) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate.
    
 0.840
BESB_067460
S1 RNA binding domain-containing protein.
  
 
 0.789
BESB_061330
Uncharacterized protein.
  
 
 0.789
BESB_035950
Iron-sulfur cluster protein ISCU.
  
  
 0.721
BESB_038420
Radical SAM methylthiotransferase, MiaB/RimO family protein.
  
  
 0.680
BESB_003030
Orotate phosphoribosyltransferase.
     
 0.631
BESB_068130
Flavokinase domain-containing protein.
  
  
 0.614
BESB_023130
1-deoxy-D-xylulose-5-phosphate synthase.
 
  
 0.613
Your Current Organism:
Besnoitia besnoiti
NCBI taxonomy Id: 94643
Other names: B. besnoiti
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