STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHL64218.1Peptidase family M1. (626 aa)    
Predicted Functional Partners:
SHL64258.1
Subtilase family protein; Belongs to the peptidase S8 family.
 
  
  0.751
SHL64783.1
Protein of unknown function.
  
     0.609
SHM34993.1
Zn-dependent amino-or carboxypeptidase, M28 family.
 
 
 0.520
SHL70201.1
Threonine/homoserine/homoserine lactone efflux protein.
  
     0.479
SHL98900.1
Protein of unknown function.
  
     0.455
SHM46717.1
Protein involved in gliding motility GldC.
  
     0.442
Your Current Organism:
Flavobacterium chilense
NCBI taxonomy Id: 946677
Other names: CCM 7940, F. chilense, Flavobacterium chilense Kampfer et al. 2012, Flavobacterium sp. LM-09-Fp, LMG 26360, LMG:26360, strain LM-09-Fp
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.