STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM90437.1Sulfate permease, SulP family. (511 aa)    
Predicted Functional Partners:
SHL03990.1
Acyl transferase domain-containing protein.
    
 
 0.828
SHL63250.1
NADH dehydrogenase subunit M.
  
 
 0.724
SHM22782.1
Glycine dehydrogenase; Belongs to the GcvP family.
    
  0.721
SHL18138.1
Concanavalin A-like lectin/glucanases superfamily protein.
    
   0.615
SHL18165.1
Concanavalin A-like lectin/glucanases superfamily protein.
    
   0.615
SHL04243.1
Amino acid adenylation domain-containing protein.
  
 
 0.598
SHL73869.1
Ankyrin repeat.
    
   0.564
SHL73899.1
Ankyrin repeat-containing protein.
    
   0.564
SHL82890.1
Ankyrin repeat-containing protein.
    
   0.564
SHL97567.1
Ankyrin repeat-containing protein.
    
   0.564
Your Current Organism:
Flavobacterium chilense
NCBI taxonomy Id: 946677
Other names: CCM 7940, F. chilense, Flavobacterium chilense Kampfer et al. 2012, Flavobacterium sp. LM-09-Fp, LMG 26360, LMG:26360, strain LM-09-Fp
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