STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG62560.1Starch-binding associating with outer membrane. (489 aa)    
Predicted Functional Partners:
SHG62580.1
TonB-linked outer membrane protein, SusC/RagA family.
 
 
   0.942
SHG65707.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.810
SHG61868.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.788
SHG79824.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.785
SHH72222.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.784
SHH65948.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.778
SHH89718.1
TonB-linked outer membrane protein, SusC/RagA family.
  
     0.744
SHH28645.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.737
SHH37706.1
TonB-linked outer membrane protein, SusC/RagA family.
  
     0.726
SHH48401.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.718
Your Current Organism:
Chryseolinea serpens
NCBI taxonomy Id: 947013
Other names: ATCC BAA-2075, C. serpens, Chryseolinea serpens Kim et al. 2013, DSM 24574, Sphingobacteria bacterium RYG, strain RYG
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.