STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG67334.1Amidohydrolase. (394 aa)    
Predicted Functional Partners:
SHG67303.1
Dihydrodipicolinate synthase/N-acetylneuraminate lyase.
       0.765
SHG67286.1
Nucleoside-diphosphate-sugar epimerase.
       0.762
SHG67358.1
Ribosomal protein S18 acetylase RimI.
       0.749
SHG99086.1
Glutamate synthase (NADPH/NADH) large chain.
    
  0.716
dapF
Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.
    
 0.500
purL
Phosphoribosylformylglycinamidine synthase; Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate.
    
  0.466
SHG67382.1
Hypothetical protein.
       0.439
SHG67404.1
Hypothetical protein.
       0.439
SHG45152.1
2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase; Belongs to the transferase hexapeptide repeat family.
 
  
 0.429
SHH98644.1
Aminobenzoyl-glutamate utilization protein B.
  
     0.425
Your Current Organism:
Chryseolinea serpens
NCBI taxonomy Id: 947013
Other names: ATCC BAA-2075, C. serpens, Chryseolinea serpens Kim et al. 2013, DSM 24574, Sphingobacteria bacterium RYG, strain RYG
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