STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHH64157.1Peptidase family S41. (494 aa)    
Predicted Functional Partners:
SHH34010.1
Tetratricopeptide repeat-containing protein.
   
 
 0.936
SHI00046.1
Flp pilus assembly protein TadD, contains TPR repeats.
   
 0.706
SHH62258.1
Gliding motility-associated C-terminal domain-containing protein.
  
   0.562
SHH64143.1
Hypothetical protein.
       0.527
SHH74132.1
Gliding motility-associated C-terminal domain-containing protein.
  
   0.473
SHH64181.1
Hypothetical protein.
       0.462
secD
SecD/SecF fusion protein; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily.
   
  0.460
SHH64228.1
Peptidase family C25.
  
   0.455
SHH35210.1
Hypothetical protein.
  
   0.423
SHG77943.1
Gliding motility-associated C-terminal domain-containing protein.
  
   0.414
Your Current Organism:
Chryseolinea serpens
NCBI taxonomy Id: 947013
Other names: ATCC BAA-2075, C. serpens, Chryseolinea serpens Kim et al. 2013, DSM 24574, Sphingobacteria bacterium RYG, strain RYG
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