STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHH89498.1N-acyl-D-aspartate/D-glutamate deacylase. (830 aa)    
Predicted Functional Partners:
SHG87035.1
Beta-glucosidase.
 
 
 0.750
guaA
GMP synthase (glutamine-hydrolysing); Catalyzes the synthesis of GMP from XMP.
     
 0.683
SHH24290.1
Beta-glucosidase.
 
 
  0.679
SHH78538.1
Hexosaminidase.
 
  
  0.668
SHH79566.1
Beta-glucosidase; Belongs to the glycosyl hydrolase 3 family.
  
 
  0.638
SHH98440.1
Beta-glucosidase.
  
 
  0.638
SHH99865.1
beta-N-acetylhexosaminidase.
  
 
  0.638
SHG40438.1
Glycosyl hydrolase family 20, catalytic domain.
    
  0.623
SHG51397.1
Glycosyl hydrolase family 20, catalytic domain.
    
  0.623
SHG70917.1
Hexosaminidase.
    
  0.623
Your Current Organism:
Chryseolinea serpens
NCBI taxonomy Id: 947013
Other names: ATCC BAA-2075, C. serpens, Chryseolinea serpens Kim et al. 2013, DSM 24574, Sphingobacteria bacterium RYG, strain RYG
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