STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RvY_00074ABC transmembrane type-1 domain-containing protein. (777 aa)    
Predicted Functional Partners:
RvY_03999-3
Uncharacterized protein.
 
     0.919
RvY_00074-2
Uncharacterized protein.
 
     0.917
RvY_00074-4
Uncharacterized protein.
 
     0.917
RvY_17890-1
PDZ domain-containing protein.
   
 0.698
RvY_10044-1
LisH domain-containing protein.
  
 0.693
RvY_14969-1
SCP2 domain-containing protein.
   
 0.657
RvY_15754
Uncharacterized protein.
   
 0.657
RvY_15755-1
SCP2 domain-containing protein.
   
 0.657
RvY_13127-1
Ubiquitin carboxyl-terminal hydrolase.
    
  0.629
RvY_18111-1
Uncharacterized protein.
 
 
 0.620
Your Current Organism:
Ramazzottius varieornatus
NCBI taxonomy Id: 947166
Other names: R. varieornatus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.