STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RvY_00476-1Uncharacterized protein. (901 aa)    
Predicted Functional Partners:
RvY_05333-1
LID domain-containing protein.
    
 0.729
RvY_11109-1
MADS-box domain-containing protein.
    
 0.724
RvY_01732-1
Uncharacterized protein.
  
 
  0.685
RvY_11058-1
BHLH domain-containing protein.
    
 0.676
RvY_08810
Homeobox domain-containing protein.
   
 0.660
RvY_04968-1
Uncharacterized protein.
    
 0.624
RvY_12272-1
Uncharacterized protein.
    
 0.624
RvY_13302-1
TPK_B1_binding domain-containing protein.
    
  0.595
RvY_04687-1
Uncharacterized protein.
   
  
 0.567
RvY_06043-1
Uncharacterized protein.
      
 0.555
Your Current Organism:
Ramazzottius varieornatus
NCBI taxonomy Id: 947166
Other names: R. varieornatus
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