STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RvY_01576-1Uncharacterized protein. (434 aa)    
Predicted Functional Partners:
RvY_12826-1
Probable lysine-specific histone demethylase 1; Probable histone demethylase that specifically demethylates 'Lys-4' of histone H3, a specific tag for epigenetic transcriptional activation, thereby acting as a corepressor. Acts by oxidizing the substrate by FAD to generate the corresponding imine that is subsequently hydrolyzed. Demethylates both mono- and di-methylated 'Lys-4' of histone H3.
  
  
0.664
RvY_07732-1
Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.
    
  0.644
RvY_05403-1
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
    
  0.638
RvY_05479-1
Uncharacterized protein.
     
 0.630
RvY_11565-1
PABS domain-containing protein; Belongs to the spermidine/spermine synthase family.
     
 0.629
RvY_15881-1
PABS domain-containing protein.
     
 0.629
RvY_10695-1
Uncharacterized protein.
    
  0.615
RvY_10468-1
Uncharacterized protein.
    
  0.593
RvY_18382-1
Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.
    
  0.593
RvY_18344
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
    
  0.590
Your Current Organism:
Ramazzottius varieornatus
NCBI taxonomy Id: 947166
Other names: R. varieornatus
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