STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RvY_01304-3Uncharacterized protein. (372 aa)    
Predicted Functional Partners:
RvY_07843-1
UBX domain-containing protein.
    
 0.999
RvY_14979-1
Uncharacterized protein.
   
 0.948
RvY_00201-1
Uncharacterized protein.
     
 0.879
RvY_17083-1
Uncharacterized protein.
   
 
 0.827
RvY_07800-1
Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.
   
 
 0.822
RvY_00564-1
Ubiquitin-like domain-containing protein.
   
 0.821
RvY_00236
Uncharacterized protein; Belongs to the AAA ATPase family.
    
 0.819
RvY_00236-2
Uncharacterized protein; Belongs to the AAA ATPase family.
    
 0.819
RvY_05167-1
Uncharacterized protein; Belongs to the AAA ATPase family.
    
 0.819
RvY_13284-1
Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.
   
 
 0.819
Your Current Organism:
Ramazzottius varieornatus
NCBI taxonomy Id: 947166
Other names: R. varieornatus
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