STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RvY_02750-1WD_REPEATS_REGION domain-containing protein. (466 aa)    
Predicted Functional Partners:
RvY_05878-1
Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.
   
 
 0.993
RvY_05785-1
Uncharacterized protein.
   
 
 0.986
RvY_17677-1
Uncharacterized protein.
   
 
 0.984
RvY_17772-1
Brix domain-containing protein.
   
    0.981
RvY_02236-1
Uncharacterized protein.
   
 
 0.978
RvY_07909-2
RNA helicase.
   
 
 0.978
RvY_13951-1
Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.
   
  
 0.976
RvY_16650-1
WD_REPEATS_REGION domain-containing protein.
   
  
 0.976
RvY_15502-1
Uncharacterized protein.
   
  
 0.975
RvY_19185-1
Uncharacterized protein.
   
 
 0.974
Your Current Organism:
Ramazzottius varieornatus
NCBI taxonomy Id: 947166
Other names: R. varieornatus
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