STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RvY_04929-1Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family. (994 aa)    
Predicted Functional Partners:
RvY_07065-1
Uncharacterized protein.
 
 0.999
RvY_12841-1
WHEP-TRS domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.989
RvY_07193-1
Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
0.983
RvY_06243-1
Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
0.983
RvY_16965-1
Tyrosine--tRNA ligase.
  
 0.974
RvY_06511-1
AA_TRNA_LIGASE_II domain-containing protein.
   
 0.965
RvY_06512-1
Uncharacterized protein.
   
 0.965
RvY_14392-1
Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.948
RvY_17841-1
Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
0.948
RvY_07142-1
Lysine--tRNA ligase.
  
 0.940
Your Current Organism:
Ramazzottius varieornatus
NCBI taxonomy Id: 947166
Other names: R. varieornatus
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