STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RvY_05759-1Anion exchange protein. (1388 aa)    
Predicted Functional Partners:
RvY_07472-1
Uncharacterized protein.
    
 0.774
RvY_11257-1
PHB domain-containing protein.
    
 0.636
RvY_10044-1
LisH domain-containing protein.
    
 0.636
RvY_00236
Uncharacterized protein; Belongs to the AAA ATPase family.
    
  0.617
RvY_00236-2
Uncharacterized protein; Belongs to the AAA ATPase family.
    
  0.617
RvY_05167-1
Uncharacterized protein; Belongs to the AAA ATPase family.
    
  0.617
RvY_13472-1
U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.
     
 0.606
RvY_12938-1
Sm domain-containing protein.
     
 0.601
RvY_19368-1
U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.
     
 0.601
RvY_06479-1
Uncharacterized protein.
    
  0.587
Your Current Organism:
Ramazzottius varieornatus
NCBI taxonomy Id: 947166
Other names: R. varieornatus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.