STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RvY_06118-1Uncharacterized protein. (591 aa)    
Predicted Functional Partners:
RvY_05363-1
HDAg domain-containing protein.
    
 0.998
RvY_09118-1
Uncharacterized protein.
   
 0.998
RvY_15263-1
RRM domain-containing protein.
    
 0.997
RvY_15295-1
Transcription elongation factor SPT5.
    
 0.983
RvY_06962-1
Uncharacterized protein.
   
  0.970
RvY_10288-1
Uncharacterized protein.
    
  0.968
RvY_06213-1
Uncharacterized protein.
    
  0.964
RvY_08967-1
RPOLD domain-containing protein.
    
 0.962
RvY_08301-1
Spt4 domain-containing protein.
    
 0.949
RvY_17782-1
DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.
    
  0.941
Your Current Organism:
Ramazzottius varieornatus
NCBI taxonomy Id: 947166
Other names: R. varieornatus
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