STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RvY_06170-1Mothers against decapentaplegic homolog. (474 aa)    
Predicted Functional Partners:
RvY_11569-1
c-SKI_SMAD_bind domain-containing protein.
   
 0.877
RvY_05602-1
Mothers against decapentaplegic homolog.
   
0.839
RvY_13307-1
Mothers against decapentaplegic homolog.
   
0.839
RvY_01332-1
E3 ubiquitin-protein ligase.
    
 0.817
RvY_04896-1
Receptor protein serine/threonine kinase; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily.
   
 0.817
RvY_06059-1
MH2 domain-containing protein.
  
 
 0.816
RvY_11505-1
TGF_BETA_2 domain-containing protein.
  
 
 0.810
RvY_00613-1
WW domain-containing protein.
    
 0.803
RvY_14964-1
Receptor protein serine/threonine kinase; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily.
   
 0.798
RvY_02583-1
DUF3677 domain-containing protein.
    
 0.794
Your Current Organism:
Ramazzottius varieornatus
NCBI taxonomy Id: 947166
Other names: R. varieornatus
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