STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RvY_07014-1VPS9 domain-containing protein. (506 aa)    
Predicted Functional Partners:
RvY_02209-1
Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.
    
 
 0.945
RvY_11530-1
Uncharacterized protein.
    
 0.942
RvY_08927-1
Uncharacterized protein.
   
 0.893
RvY_07131-1
Uncharacterized protein.
    
 0.884
RvY_15875-1
Uncharacterized protein.
    
 0.884
RvY_15464
Uncharacterized protein.
    
 
 0.736
RvY_15464-2
Uncharacterized protein.
    
 
 0.736
RvY_12841-1
WHEP-TRS domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
   
 0.712
RvY_13918-1
Serine/threonine-protein phosphatase.
    
 0.701
RvY_04966-1
Ubiquitin-like domain-containing protein.
    
 0.699
Your Current Organism:
Ramazzottius varieornatus
NCBI taxonomy Id: 947166
Other names: R. varieornatus
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