STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RvY_07976-1Uncharacterized protein. (4419 aa)    
Predicted Functional Partners:
RvY_04966-1
Ubiquitin-like domain-containing protein.
    
 0.969
RvY_00201-1
Uncharacterized protein.
   
 
0.958
RvY_00564-1
Ubiquitin-like domain-containing protein.
   
 0.955
RvY_09491-1
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
 0.927
RvY_01883-1
Uncharacterized protein.
   
 0.873
RvY_04737-1
Uncharacterized protein.
   
 0.873
RvY_18563-1
Uncharacterized protein.
   
 0.873
RvY_08645-1
E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.
   
 
 0.764
RvY_02983-1
RRM domain-containing protein.
    
 
 0.744
RvY_06396-1
Uncharacterized protein.
   
 0.705
Your Current Organism:
Ramazzottius varieornatus
NCBI taxonomy Id: 947166
Other names: R. varieornatus
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