RvY_07704-3 protein (Ramazzottius varieornatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

RvY_07704-3

Piezo-type mechanosensitive ion channel component. (2469 aa)

Predicted Functional Partners:

RvY_18528-1

0.924

RvY_04613

0.897

RvY_04613-2

0.897

RvY_13996-1

0.883

RvY_05192-1

0.880

RvY_10661-1

0.877

RvY_00997-1

0.854

RvY_09335-1

0.772

RvY_05258

0.760

RvY_05258-2

0.760

Your Current Organism:

Ramazzottius varieornatus

NCBI taxonomy Id: 947166
Other names: R. varieornatus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RvY_00997-1	RvY_04613	A0A1D1UEP8	A0A1D1US87	Uncharacterized protein.	Uncharacterized protein.	0.685
RvY_00997-1	RvY_04613-2	A0A1D1UEP8	A0A1D1UVQ7	Uncharacterized protein.	Uncharacterized protein.	0.685
RvY_00997-1	RvY_05192-1	A0A1D1UEP8	A0A1D1UU99	Uncharacterized protein.	DNA helicase; Belongs to the MCM family.	0.999
RvY_00997-1	RvY_05258	A0A1D1UEP8	A0A1D1UUG1	Uncharacterized protein.	DNA helicase; Belongs to the MCM family.	0.998
RvY_00997-1	RvY_05258-2	A0A1D1UEP8	A0A1D1UY40	Uncharacterized protein.	DNA helicase; Belongs to the MCM family.	0.998
RvY_00997-1	RvY_07704-3	A0A1D1UEP8	A0A1D1V5T8	Uncharacterized protein.	Piezo-type mechanosensitive ion channel component.	0.854
RvY_00997-1	RvY_09335-1	A0A1D1UEP8	A0A1D1VBF9	Uncharacterized protein.	Cell division control protein; Involved in the initiation of DNA replication. Also participates in checkpoint controls that ensure DNA replication is completed before mitosis is initiated; Belongs to the CDC6/cdc18 family.	0.979
RvY_00997-1	RvY_10661-1	A0A1D1UEP8	A0A1D1VDG9	Uncharacterized protein.	Uncharacterized protein.	0.990
RvY_00997-1	RvY_13996-1	A0A1D1UEP8	A0A1D1VPW5	Uncharacterized protein.	TIMELESS-interacting protein; Plays an important role in the control of DNA replication and the maintenance of replication fork stability. Belongs to the CSM3 family.	0.988
RvY_00997-1	RvY_18528-1	A0A1D1UEP8	A0A1D1WAK4	Uncharacterized protein.	ATR; Belongs to the PI3/PI4-kinase family.	0.905
RvY_04613	RvY_00997-1	A0A1D1US87	A0A1D1UEP8	Uncharacterized protein.	Uncharacterized protein.	0.685
RvY_04613	RvY_05192-1	A0A1D1US87	A0A1D1UU99	Uncharacterized protein.	DNA helicase; Belongs to the MCM family.	0.832
RvY_04613	RvY_05258	A0A1D1US87	A0A1D1UUG1	Uncharacterized protein.	DNA helicase; Belongs to the MCM family.	0.551
RvY_04613	RvY_05258-2	A0A1D1US87	A0A1D1UY40	Uncharacterized protein.	DNA helicase; Belongs to the MCM family.	0.551
RvY_04613	RvY_07704-3	A0A1D1US87	A0A1D1V5T8	Uncharacterized protein.	Piezo-type mechanosensitive ion channel component.	0.897
RvY_04613	RvY_09335-1	A0A1D1US87	A0A1D1VBF9	Uncharacterized protein.	Cell division control protein; Involved in the initiation of DNA replication. Also participates in checkpoint controls that ensure DNA replication is completed before mitosis is initiated; Belongs to the CDC6/cdc18 family.	0.640
RvY_04613	RvY_10661-1	A0A1D1US87	A0A1D1VDG9	Uncharacterized protein.	Uncharacterized protein.	0.636
RvY_04613	RvY_13996-1	A0A1D1US87	A0A1D1VPW5	Uncharacterized protein.	TIMELESS-interacting protein; Plays an important role in the control of DNA replication and the maintenance of replication fork stability. Belongs to the CSM3 family.	0.632
RvY_04613	RvY_18528-1	A0A1D1US87	A0A1D1WAK4	Uncharacterized protein.	ATR; Belongs to the PI3/PI4-kinase family.	0.991
RvY_04613-2	RvY_00997-1	A0A1D1UVQ7	A0A1D1UEP8	Uncharacterized protein.	Uncharacterized protein.	0.685