RvY_07821-1 protein (Ramazzottius varieornatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

RvY_07821-1

MFAP1 domain-containing protein. (443 aa)

Predicted Functional Partners:

RvY_10446-1

0.999

RvY_12047-1

0.998

RvY_17785-1

0.997

RvY_18956-1

0.997

RvY_00629-1

0.996

RvY_02214-1

0.994

RvY_03175-1

0.993

RvY_06729-1

0.993

RvY_09936-1

0.993

RvY_07491-1

0.992

Your Current Organism:

Ramazzottius varieornatus

NCBI taxonomy Id: 947166
Other names: R. varieornatus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RvY_00629-1	RvY_02214-1	A0A1D1UJP5	A0A1D1UQZ0	Nop domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.998
RvY_00629-1	RvY_03175-1	A0A1D1UJP5	A0A1D1UQL2	Nop domain-containing protein.	Uncharacterized protein.	0.997
RvY_00629-1	RvY_06729-1	A0A1D1UJP5	A0A1D1V950	Nop domain-containing protein.	Uncharacterized protein.	0.789
RvY_00629-1	RvY_07491-1	A0A1D1UJP5	A0A1D1V8G2	Nop domain-containing protein.	CPSF_A domain-containing protein.	0.978
RvY_00629-1	RvY_07821-1	A0A1D1UJP5	A0A1D1V6G8	Nop domain-containing protein.	MFAP1 domain-containing protein.	0.996
RvY_00629-1	RvY_09936-1	A0A1D1UJP5	A0A1D1VGF4	Nop domain-containing protein.	SF3b1 domain-containing protein.	0.975
RvY_00629-1	RvY_10446-1	A0A1D1UJP5	A0A1D1VCR8	Nop domain-containing protein.	Uncharacterized protein.	0.986
RvY_00629-1	RvY_17785-1	A0A1D1UJP5	A0A1D1W3E2	Nop domain-containing protein.	Uncharacterized protein.	0.998
RvY_00629-1	RvY_18956-1	A0A1D1UJP5	A0A1D1WBX9	Nop domain-containing protein.	Uncharacterized protein.	0.999
RvY_02214-1	RvY_00629-1	A0A1D1UQZ0	A0A1D1UJP5	WD_REPEATS_REGION domain-containing protein.	Nop domain-containing protein.	0.998
RvY_02214-1	RvY_03175-1	A0A1D1UQZ0	A0A1D1UQL2	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.998
RvY_02214-1	RvY_06729-1	A0A1D1UQZ0	A0A1D1V950	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.654
RvY_02214-1	RvY_07491-1	A0A1D1UQZ0	A0A1D1V8G2	WD_REPEATS_REGION domain-containing protein.	CPSF_A domain-containing protein.	0.978
RvY_02214-1	RvY_07821-1	A0A1D1UQZ0	A0A1D1V6G8	WD_REPEATS_REGION domain-containing protein.	MFAP1 domain-containing protein.	0.994
RvY_02214-1	RvY_09936-1	A0A1D1UQZ0	A0A1D1VGF4	WD_REPEATS_REGION domain-containing protein.	SF3b1 domain-containing protein.	0.964
RvY_02214-1	RvY_10446-1	A0A1D1UQZ0	A0A1D1VCR8	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.977
RvY_02214-1	RvY_17785-1	A0A1D1UQZ0	A0A1D1W3E2	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.998
RvY_02214-1	RvY_18956-1	A0A1D1UQZ0	A0A1D1WBX9	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.997
RvY_03175-1	RvY_00629-1	A0A1D1UQL2	A0A1D1UJP5	Uncharacterized protein.	Nop domain-containing protein.	0.997
RvY_03175-1	RvY_02214-1	A0A1D1UQL2	A0A1D1UQZ0	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.998