STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RvY_07495-3Uncharacterized protein. (319 aa)    
Predicted Functional Partners:
RvY_07495
DOMON domain-containing protein.
 
     0.939
RvY_12826-1
Probable lysine-specific histone demethylase 1; Probable histone demethylase that specifically demethylates 'Lys-4' of histone H3, a specific tag for epigenetic transcriptional activation, thereby acting as a corepressor. Acts by oxidizing the substrate by FAD to generate the corresponding imine that is subsequently hydrolyzed. Demethylates both mono- and di-methylated 'Lys-4' of histone H3.
     
 0.618
RvY_04368-1
Uncharacterized protein.
     
 0.556
RvY_08316-1
Uncharacterized protein.
     
 0.556
RvY_08785-1
Uncharacterized protein.
     
 0.556
RvY_02389-1
Uncharacterized protein.
     
 0.535
RvY_06209-1
Uncharacterized protein.
     
 0.535
RvY_10522-1
Uncharacterized protein.
     
 0.535
RvY_13801-1
Uncharacterized protein.
     
 0.407
RvY_16959-1
Uncharacterized protein.
     
 0.407
Your Current Organism:
Ramazzottius varieornatus
NCBI taxonomy Id: 947166
Other names: R. varieornatus
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