STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RvY_08316-1Uncharacterized protein. (495 aa)    
Predicted Functional Partners:
RvY_07065-1
Uncharacterized protein.
    
 0.819
RvY_09184-1
BH4_AAA_HYDROXYL_2 domain-containing protein.
   
 0.812
RvY_05718-1
Cytochrome b5 heme-binding domain-containing protein; Belongs to the cytochrome b5 family.
   
 0.793
RvY_15825-1
ANK_REP_REGION domain-containing protein.
  
 
 0.780
RvY_17592
Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.
    
 0.778
RvY_17592-2
Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.
    
 0.778
RvY_12826-1
Probable lysine-specific histone demethylase 1; Probable histone demethylase that specifically demethylates 'Lys-4' of histone H3, a specific tag for epigenetic transcriptional activation, thereby acting as a corepressor. Acts by oxidizing the substrate by FAD to generate the corresponding imine that is subsequently hydrolyzed. Demethylates both mono- and di-methylated 'Lys-4' of histone H3.
    
 0.773
RvY_06514-1
Aminotran_1_2 domain-containing protein.
    
 0.747
RvY_18960-1
Aspartate aminotransferase.
   
 
 0.745
RvY_13295-1
ELFV_dehydrog domain-containing protein; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
   
 
 0.741
Your Current Organism:
Ramazzottius varieornatus
NCBI taxonomy Id: 947166
Other names: R. varieornatus
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