STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RvY_10125-1Uncharacterized protein. (302 aa)    
Predicted Functional Partners:
RvY_02209-1
Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.
   
 
 0.885
RvY_14168-1
Uncharacterized protein.
   
 
 0.869
RvY_10090-1
KOG2701 domain-containing protein.
    
 
 0.852
RvY_10226-1
COMM domain-containing protein.
    
 
 0.819
RvY_13668-1
COMM domain-containing protein.
    
 
 0.817
RvY_15785
Uncharacterized protein.
    
 
 0.728
RvY_15785-2
COMM domain-containing protein.
    
 
 0.728
RvY_06843
Uncharacterized protein.
   
 
 0.721
RvY_06843-2
Uncharacterized protein.
   
 
 0.721
RvY_09543-1
Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.
    
 
 0.635
Your Current Organism:
Ramazzottius varieornatus
NCBI taxonomy Id: 947166
Other names: R. varieornatus
Server load: low (16%) [HD]